g
,
y
odel and a model of the mixture model algorithm, where x was a
the MF statistic for three replicates. All models were constructed
lusters only, where one cluster was for essential genes and the
s for non-essential genes.
eans(x,centers=2) # use K-means
eans(x,centers=2) # use Fuzzy c-means
lust(x,G=2) # use mixture model
umbers of predicted essential genes were 474, 474 and 435 using
eans model, the fuzzy C-means model and the model of the
model algorithm, respectively. Among them, 433 genes were
as essential genes by all three prediction models. The
nce rate was 90.97% (the highest) for 476 predicted essential
emonstrating the powerfulness of a multivariate model to
the uncertainty of gene essentiality analysis for this data set.
51 shows the Venn diagram of the consensus analysis of these
ate models.
The consensus analysis of the essential genes predicted by the K-means model,
-means model and the mixture model for three Francisella Tularensis replicates.
y
ve gene discovery is a subject for filtering out non-responsive
d discovering responsive genes for further investigation in an